Publications

Mogan Gim†, Jueon Park†, Soyon Park, Sanghoon Lee, Seungheun Baek, Junhyun Lee, Ngoc-Quang Nguyen, Jaewoo Kang*. MolPLA: A Molecular Pre-training Framework for Learning Cores, R-Groups and their Linker Joints. ISMB 2024, Bioinformatics, 2024 (IF: 4.4)

Minbyul Jeong, Jiwoong Sohn, Mujeen Sung*, Jaewoo Kang*.  Improving Medical Reasoning through Retrieval and Self-Reflection with Retrieval-Augmented Large Language Models . ISMB 2024, Bioinformatics, 2024 (IF: 4.4)

Ngoc-Quang Nguyen, Sejeong Park, Mogan Gim, Jaewoo Kang*. MulinforCPI: enhancing precision of compound–protein interaction prediction through novel perspectives on multi-level information integration. Briefings In Bioinformatics, Jan 2024

Sanghoon Lee, Gwanghoon Jang, Chanhwi Kim, Sejeong Park, Kiwoong Yoo, Jihye Kim, Sunkyu Kim*, Jaewoo Kang*. Enhancing Clinical Outcome Predictions through Auxiliary Loss and Sentence-Level Self-Attention BIBM 2023, Dec 2023

Wonjin Yoon, Sean Yi, Richard Jackson, Hyunjae Kim, Sunkyu Kim, Jaewoo Kang*. Biomedical relation extraction with knowledge base–refined weak supervision. Database, July 2023

Junhyun Lee, Bumsoo Kim, Minji Jeon, Jaewoo Kang*. Co-Attention Graph Pooling for Efficient Pairwise Graph Interaction Learning. IEEE Access, 2023

Timothy Bergquist, Thomas Schaffter, Yao Yan, Thomas Yu, Justin Prosser, Jifan Gao, Guanhua Chen, Łukasz Charzewski, Zofia Nawalany, Ivan Brugere, Renata Retkute, Alidivinas Prusokas, Augustinas Prusokas, Yonghwa Choi, Sanghoon Lee, Junseok Choe, Inggeol Lee, Sunkyu Kim, Jaewoo Kang, Sean D. Mooney*, Justin Guinney* and the Patient Mortality Prediction DREAM Challenge Consortium. Evaluation of crowdsourced mortality prediction models as a framework for assessing artificial intelligence in medicine. JAMIA, 2023 (IF: 6.4) 

Mogan Gim, Junseok Choe, Seungheun Baek, Jueon Park, Chaeeun Lee, Minjae Ju, Sumin Lee, Jaewoo Kang*. ArkDTA: Attention Regularization guided by non-Covalent Interactions for Explainable Drug-Target Binding Affinity Prediction . ISMB 2023, Bioinformatics, 2023 (IF: 6.931)

Jinkyu Kim†, Donghee Choi†, Mogan Gim, Jaewoo Kang*. HADAPS: Hierarchical Adaptive Multi-Asset Portfolio Selection. IEEE Access, 2023 (IF: 3.476)

Donghee Choi, Mogan Gim, Samy Badreddine, Hajung Kim, Donghyeon Park*, Jaewoo Kang*. KitchenScale: Learning to Predict Ingredient Quantities from Recipe Contexts. Expert Systems With Applications, 2023 (IF: 8.665) 

Ngoc-Quang Nguyen, Gwanghoon Jang, Hajung Kim, Jaewoo Kang. Perceiver CPI: A nested cross-attention network for compound-protein interaction prediction. Bioinformatics, 2022 (IF: 6.931)

Hyunjae Kim, Mujeen Sung, Wonjin Yoon, Sungjoon Park, Jaewoo Kang. Full-text Chemical Identification with Improved Generalizability and Tagging Consistency. DATABASE, Volume 2022, 2022 (IF: 4.462)

Mujeen Sung†, Minbyul Jeong†, Yonghwa Choi, Donghyeon Kim, Jinhyuk Lee, Jaewoo Kang*. BERN2: an advanced neural biomedical named entity recognition and normalization tool. Bioinformatics, 2022 (IF: 6.931)

Wonjin Yoon, Richard Jackson, Aron Lagerberg*, Jaewoo Kang*. Sequence Tagging for Biomedical Extractive Question Answering. Bioinformatics, Volume 38, Issue 15, August 2022 (IF: 6.931)

Seongjun Yun, Minbyul Jeong, Sungdong Yoo, Seunghun Lee, S Yi Sean, Raehyun Kim, Jaewoo Kang, Hyunwoo J Kim*.  Graph Transformer Networks: Learning meta-path graphs to improve GNNs. Neural Networks, vol. 153, August 2022 (IF: 8.050) 

Hyunjae Kim, Jaewoo Kang*. How Do Your Biomedical Named Entity Recognition Models Generalize to Novel Entities? IEEE Access, 2022 (IF: 3.367)

Sunkyu Kim†, Choong-kun Lee†, Yonghwa Choi, Eun Sil Baek, Jeong Eun Choi, Joonseok Lim, Jaewoo Kang* and Sang Joon Shin*, Deep-Learning-Based Natural Language Processing of Serial Free-Text Radiological Reports for Predicting Rectal Cancer Patient Survival. Frontiers in Oncology, 2021 (IF: 6.244)

Meijun Liu, Yi Bu, Chongyan Chen, Jian Xu, Daifeng Li, Yan Leng, Richard B. Freeman, Eric T. Meyer, Wonjin Yoon, Mujeen Sung, Minbyul Jeong, Jinhyuk Lee, Jaewoo Kang, Chao Min, Min Song, Yujia Zhai, Ying Ding*. Pandemics are catalysts of scientific novelty: Evidence from COVID-19. Journal of the Association for Information Science and Technology, 2021. (IF: 2.41) - International research collaboration work.

Zhaoping Xiong†, Minji Jeon†, Robert J Allaway†, Jaewoo Kang, Donghyeon Park, Jinhyuk Lee, Hwisang Jeon, Miyoung Ko, Hualiang Jiang, Mingyue Zheng, Aik Choon Tan, Xindi Guo, The Multi-Targeting Drug DREAM Challenge Community, Kristen K Dang, Alex Tropsha, Chana Hecht, Tirtha K. Das, Heather A. Carlson, Ruben Abagyan, Justin Guinney, Avner Schlessinger*, Ross Cagan*. Crowdsourced identification of multi-target kinase inhibitors for RET- and TAU- based disease: the Multi-Targeting Drug DREAM Challenge. PLOS Computational Biology, 2021 (IF: 4.475)

Mogan Gim†, Donghyeon Park†, Michael Spranger, Kana Maruyama, Jaewoo Kang*. RecipeBowl: A Cooking Recommender for Ingredients and Recipes Using Set Transformer. IEEE Access, vol. 9, October 2021 (IF: 3.745)

Anna Cichonska, Balaguru Ravikumar, Robert J Allaway, Fangping Wan, Sungjoon Park, Olexandr Isayev, Shuya Li, Michael Mason, Andrew Lamb, Zia-ur-Rehman Tanoli, Minji Jeon, Sunkyu Kim, Mariya Popova, Stephen Capuzzi, Jianyang Zeng, Kristen Dang, Gregory Koytiger, Jaewoo Kang, et al. Crowdsourced mapping of unexplored target space of kinase inhibitors. Nature Communications, vol. 12, Article number: 3307 (2021) (IF: 14.919)

Hyunjae Kim†, Yookyung Ko†, Jinheon Baek, Jaewoo Kang*.  Exploring The Spatial Reasoning Ability of Neural Models in Human IQ Tests. Neural Networks, vol. 140, August 2021 (IF: 8.050) 

Gwanghoon Jang, Sungjoon Park*, Sanghoon Lee, Sunkyu Kim, Sejeong Park, Jaewoo Kang*, Predicting mechanism of action of novel compounds using compound structure and transcriptomic signature co-embedding. Bioinformatics, Volume 37, Issue Supplement_1 , 2021 (IF: 6.937) 

• Presented at the 29th Conference on Intelligent Systems for Molecular Biology and the 20th European Conference on Computational Biology (ISMB/ECCB) 2021

Donghyeon Park, Mogan Gim, Seoyoon Kim,  Michael Spranger, Jaewoo Kang*. FlavorGraph: A large-scale food-chemical graph for generating food representations and recommending food pairings. Scientific Reports, vol. 11, Article number: 931 (2021) (IF: 4.379)

Mi Yang, Francesca Petralia, Zhi Li, Hongyang Li, Xiaoyu Song, Sunkyu Kim, Heewon Lee, Han Yu, Bora Lee, Seohui Bae, Eunji Heo, Jan Kaczmarczyk, Piotr Stępniak, Michał Warchoł, Thomas Yu, Anna Calinawan, Paul Boutros, Samuel Payne, Emily Boja, Henry Rodriguez, Gustavo Stolovitzky, Yuanfang Guan, Jaewoo Kang, Pei Wang, David Fenyö*. Community Assessment of the Predictability of Cancer Protein and Phosphoprotein Levels from Genomics and Transcriptomics. Cell Systems, Volume 11, Issue 2, August 2020 (IF: 10.304)

Sungjoon Park†, Yookyung Koh†, Hwisang Jeon†, Hyunjae Kim, Yoonsun Yeo, Jaewoo Kang*. Enhancing the interpretability of transcription factor binding site prediction using attention mechanism. Scientific Reports, vol.10, Article number: 13413 (2020)(IF: 4.379)

Jungwoon Shin, Mogan Gim, Donghyeon Park, Sunkyu Kim, Jaewoo Kang*. Bipartite Link Prediction by Intra-class Connection based Triadic Closure. IEEE Access, PP(99): 1-1 July 2020 (IF: 3.367)

Sunkyu Kim, Mogan Gim, Junseok Choe, Inggeol Lee , Jaewoo Kang*. Improved survival analysis by learning shared genomic information from pan-cancer data. Bioinformatics, Volume 36 Issue Supplement_1 (IF: 5.610) 

• Presented at The 28th Conference on Intelligent Systems for Molecular Biology (ISMB 2020)

Jian Xu, Sunkyu Kim, Min Song, Minbyul Jeong, Donghyeon Kim, Jaewoo Kang*, Justin F. Rousseau, Xin Li, Weijia Xu, Vetle I. Torvik, Yi Bu, Chongyan Chen, Islam Akef Ebeid, Daifeng Li & Ying Ding. Building a PubMed knowledge graph. Scientific Data 7, 205 (2020). June 26, 2020. (IF: 5.541)

Jinho Lee, Jaewoo Kang*. Effectively training neural networks for stock index prediction: Predicting the S&P 500 index without using its index data. PLoS ONE 15(4): e0230635. April 10, 2020. (IF: 2.776)

Jinhyuk Lee†, Wonjin Yoon†, Sungdong Kim, Donghyeon Kim, Sunkyu Kim, Chan Ho So, Jaewoo Kang*. BioBERT: a pre-trained biomedical language representation model for biomedical text mining. Bioinformatics, Volume 36, Issue 4, 15 February 2020, Pages 1234–1240. (IF: 4.531)

Jinho Lee, Raehyun Kim, Yookyung Koh, Jaewoo Kang*. Global Stock Market Prediction Based on Stock Chart Images Using Deep Q-Network. IEEE Access Volume 7, 2019. (IF: 4.098)

Ye Eun Jang†, Insu Jang†, Sunkyu Kim†, Subin Cho†, Daehan Kim, Mogan Gim, Jaewon Kim, Jimin Hwang,  Sangok Kim, Jaesang Kim, Jaewoo Kang, Byungwook Lee*, Sanghyuk Lee*. ChimerDB 4.0: an updated and expanded database of fusion genes. Nucleic Acids Research, gkz1013, Nov. 2019. (IF: 11.147)

Buru Chang, Yonghwa Choi, Minji Jeon, Junyhun Lee, Aram Kim, Byung-Joo Ham, Jaewoo Kang*. ARPNet: Antidepressant Response Prediction Model for Major Depressive Disorder. Genes (2019).  (IF: 3.331)

Donghyeon Kim, Jinhyuk Lee, Chan Ho So, Hwisang Jeon, Minbyul Jeong, Yonghwa Choi, Wonjin Yoon, Mujeen Sung, Jaewoo Kang*. A Neural Named Entity Recognition and Multi-Type Normalization Tool for Biomedical Text Mining. IEEE Access (2019). (IF: 4.098)

Minji Jeon†, Donghyeon Park†, Jinhyuk Lee, Hwisang Jeon, Miyoung Ko, Sunkyu Kim, Yonghwa Choi, Aik-Choon Tan, Jaewoo Kang*. ReSimNet: Drug Response Similarity Prediction using Siamese Neural Networks. Bioinformatics (2019). (IF: 4.531)

Sarvenaz Choobdar, Mehmet E. Ahsen, Jake Crawford, Mattia Tomasoni, Tao Fang, David Lamparter, Junyuan Lin, Benjamin Hescott, Xiaozhe Hu, Johnathan Mercer, Ted Natoli, Rajiv Narayan, The DREAM Module Identification Challenge Consortium et al. Assessment of network module identification across complex diseases. Nature Methods, 16(9), 843-852, Aug 2019. (IF: 28.467)

Sungjoon Park, Doyeong Hwang, Yoon Sun Yeo, Hyunggee Kim, Jaewoo Kang*. CONFIGURE: A pipeline for identifying context specific regulatory modules from gene expression data and its application to breast cancer. BMC Medical Genomics, Jul 2019. (IF: 2.568)

Michael P Menden, Dennis Wang, Yuanfang Guan, Mike J Mason, Bence Szalai, Krishna C Bulusu, Thomas Yu, Jaewoo Kang, Minji Jeon, et al. Community assessment to advance computational prediction of cancer drug combinations in a pharmacogenomic screen. Nature Communications 10, Article number: 2674 (2019). (IF: 11.878)

Wonjin  Yoon†, Chan Ho So†, Jinhyuk Lee, and Jaewoo Kang*. CollaboNet: collaboration of deep neural networks for biomedical named entity recognition. BMC Bioinformatics 2019, 20(Suppl 10):249. May 2019. (IF: 2.213)

• Presented at ACM 12th International Workshop on Data and Text Mining in Biomedical Informatics (DTMBIO2018) 

Bilal Lodhi, Jaewoo Kang*. Multipath-DenseNet: A Supervised ensemble architecture of densely connected convolutional networks. Information Sciences. Vol. 482, Pages. 63-72, May 2019. (IF: 4.305)

Donghyeon Park, Yonghwa Choi, Daehan Kim, Minhwan Yu, Seongsoon Kim and Jaewoo Kang*. Can Machines Learn to Comprehend Scientific Literature? IEEE Access. 2019-01-09, Vol 7, Pages 16246-16256, Jan. 2019. (IF: 3.557)

Hwejin Jung, Bumsoo Kim, Inyeop Lee, Junhyun Lee and Jaewoo Kang*. Classification of lung nodules in CT scans using three-dimensional deep convolutional neural networks with a checkpoint ensemble method. BMC Medical Imaging. 18:48, Dec. 2018.

Buru Chang, Yonggyu Park, Seongsoon Kim, Jaewoo Kang*. DeepPIM: A deep neural point-of-interest imputation model. Information Sciences Vol. 465 Pages. 61-71 Oct 2018. (IF: 4.305)

Hwejin Jung, Bumsoo Kim, Inyeop Lee, Minhwan Yoo, Junhyun Lee, Sooyoun Ham, Okhee Woo and Jaewoo Kang*. Detection of masses in mammograms using a one-stage object detector based on a deep convolutional neural network. PLOS ONE Vol. 13 No. 9 Pages 1-16 Sep 2018. (IF: 3.54)

Chai-Jin Lee, Dongwon Kang, Sangseon Lee, Sunwon Lee, Jaewoo Kang, Sun Kim*. In silico experiment system for testing hypothesis on gene functions using three condition specific biological networks. Methods, Volume 145, Pages 10-15, Aug 1 2018. (IF: 3.998).

Chunggyeom Kim†, Jinhyuk Lee†, Raehyun Kim, Youngbin Park, and Jaewoo Kang*. DeepNAP: Deep neural anomaly pre-detection in a semiconductor fab. Information Sciences, Vol. 457-458 Pages. 1-11 Aug 2018. (IF: 4.305).

Kim TH, Lee EJ, Choi JH, Yim SY, Lee S, Kang J, Lee YR, Lee HA, Choi HS, Kim ES, Keum B, Seo YS, Yim HJ, Jeen YT, Chun HJ, Lee HS, Kim CD, Woo HG, Um SH. Identification of novel susceptibility loci associated with hepatitis B surface antigen seroclearance in chronic hepatitis B. PLOS ONE Vol. 13 No. 7 . (IF: 3.057).

Sunkyu Kim†, Heewon Lee†, Mogan Gim, Jaewoo Kang*. Mut2Vec: distributed representation of cancerous mutation. BMC Medical Genomics Vol. 11 No. 2 Pages 33 Apr 20 2018. (IF: 2.848).

• Presented at The 28th International Conference on Genome Informatics Workshop (GIW/BIOINFO 2017)

Jihye Kim, Minjae Yoo, Jimin Shin, Hyunmin Kim, Jaewoo Kang, and Aik Choon Tan*. Systems Pharmacology-Based Approach of Connecting Disease Genes in Genome-Wide Association Studies with Traditional Chinese Medicine. International Journal of Genomics Vol. 2018 Pages 11. (IF: 2.303).

Minji Jeon, Sunkyu Kim, Sungjoon Park, Heewon Lee and Jaewoo Kang*. In Silico Drug Combination Discovery for Personalized Cancer Therapy. BMC Systems Biology Vol. 12 No. 2 Pages 16 Mar 19 2018. (IF: 2.048)

• Presented at The 28th International Conference on Genome Informatics Workshop (GIW/BIOINFO 2017)

Sungjoon Park†, Jung Min Kim†, Wonho Shin, Sung Won Han, Minji Jeon, Hyun Jin Jang, Ik-Soon Jang and Jaewoo Kang*. BTNET : Boosted tree based gene regulatory network inference algorithm using time-course measurement data. BMC Systems Biology Vol. 12 No. 2 Pages 20 Mar 19 2018. (IF: 2.303)

• Presented at The 28th International Conference on Genome Informatics Workshop (GIW/BIOINFO 2017)

Kyubum Lee, Byounggun Kim, Yonghwa Choi, Sunkyu Kim, Wonho Shin, Sunwon Lee, Sungjoon Park, Seongsoon Kim, Aik Choon Tan, Jaewoo Kang*. Deep learning of mutation-gene-drug relations from the literature. BMC Bioinformatics Vol. 19 No. 1 Jan 25 2018. (IF: 2.448).

Sangrak Lim, Kyubum Lee, Jaewoo Kang*. Drug drug interaction extraction from the literature using a recursive neural network. PLOS ONE Vol. 13 No. 1 Pages 1-17 Jan 2018. (IF: 3.057).

Sangrak Lim, Jaewoo Kang*. Chemical-gene relation extraction using recursive neural network. Database Vol. 2018 Jan 1 2018. (IF: 3.978).

Seongsoon Kim, Donghyeon Park, Yonghwa Choi, Kyubum Lee, Byounggun Kim, Minji Jeon, Jihye Kim, Aik Choon Tan, Jaewoo Kang*. A Pilot Study of Biomedical Text Comprehension using an Attention-Based Deep Neural Reader: Design and Experimental Analysis. JMIR Medical Informatics. Jan. 2018. (IF: 3.188).

Minsik Oh, Sungmin Rhee, Ji Hwan Moon, Heejoon Chae, Sunwon Lee, Jaewoo Kang, Sun Kim*. Literature-based condition-specific miRNA-mRNA target prediction. PLOS ONE Vol. 12 No. 0 Issue 3 Mar 2017. (IF: 3.057)

Myunggyo Lee†, Kyubum Lee†, Namhee Yu†, Insu Jang†, Ikjung Choi, Pora Kim, Ye Eun Jang, Byounggun Kim, Sunkyu Kim, Byungwook Lee, Jaewoo Kang*, and Sanghyuk Lee*. ChimerDB 3.0: an enhanced database for fusion genes from cancer transcriptome and literature data mining. NUCLEIC ACIDS RESEARCH 2017. (IF: 9.202)

Jusang Lee, Kyuri Jo, Sunwon Lee, Jaewoo Kang, and Sun Kim*. Prioritizing biological pathways by recognizing context in time-series gene expression data. BMC Bioinformatics Dec 23 2016. (IF: 2.435)

Benjamin Hur, Sangsoo Lim, Heejoon Chae, Seokjun Seo, Sunwon Lee, Jaewoo Kang, Sun Kim*. CLIP-GENE: a web service of the condition specific context-laid integrative analysis for gene prioritization in mouse TF knockout experiments. BIOLOGY DIRECT Oct 2016. (IF: 3.016)

Sunwon Lee†, Donghyeon Kim†, Kyubum Lee, Jaehoon Choi, Seongsoon Kim, Minji Jeon, Sangrak Lim, Donghee Choi, Sunkyu Kim, Aik-Choon Tan, Jaewoo Kang*. BEST: Next-Generation Biomedical Entity Search Tool for Knowledge Discovery from Biomedical Literature. PLOS ONE Oct 2016. (IF: 3.057)

Kyubum Lee, Wonho Shin, Byounggun Kim, Sunwon Lee, Yonghwa Choi, Sunkyu Kim, Minji Jeon, Aik Choon Tan, Jaewoo Kang*. HiPub: translating PubMed and PMC texts to networks for knowledge discovery. BIOINFORMATICS Vol. 32 Issue 18 Aug 2016. (IF: 5.766)

Kyubum Lee, Sunwon Lee, Sungjoon Park, Sunkyu Kim, Suhkyung Kim, Kwanghun Choi, Aik Choon Tan*, Jaewoo Kang*. BRONCO: Biomedical entity Relation ONcology COrpus for extracting gene-variant-disease-drug relations. DATABASE Vol. 2016 Apr 2016. (IF: 4.457)

Jocelyn Barbosa, Kyubum Lee, Sunwon Lee, Bilal Lodhi, Jae-Gu Cho, Woo-Keun Seo and Jaewoo Kang*. Efficient quantitative assessment of facial paralysis using iris segmentation and active contour-based key points detection with hybrid classifier. BMC MEDICAL IMAGING Mar 2016. 

Ryall KA, Shin J, Yoo M, Hinz TK, Kim J, Kang J, Heasley LE, Tan AC. Identifying kinase dependency in cancer cells by integrating high-throughput drug screening and kinase inhibition data. Bioinformatics Jul 23 2015. (Epub ahead of print, July 23, 2015) (IF: 4.621)

Ashis Saha†, Minji Jeon†, Aik Choon Tan, Jaewoo Kang*. iCOSSY: An Online Tool for Context-Specific Subnetwork Discovery from Gene Expression Data. PLOS One Vol. 10 Issue 7 Jul 6 2015. (IF: 3.534)  

Ryall KA, Kim J, Klauck PJ, Shin J, Yoo M, Ionkina A, Pitts TM, Tentler JJ, Diamond JR, Eckhardt SG, Heasley LE, Kang J, Tan AC*. An integrated bioinformatics analysis to dissect kinase dependency in triple negative breast cancer. BMC Genomics Vol. 0 Jun 13 2015. Accepted 6/13/15 (Proceedings of the 1st Joint GIW/InCoB Conference, Tokyo, Japan) (IF: 4.041)

Woondong Yeo, Seonho Kim, Hyunwoo Park, Jaewoo Kang*. A bibliometric method for measuring the degree of technological innovation. Technological Forecasting and Social Change Vol. 95 Pages. 152-162 Jun 1 2015. (DOI: 10.1016/j.techfore.2015.01.018) 

Minjae Yoo, Jimin Shin, Jihye Kim, Karen A. Ryall, Kyubum Lee, Sunwon Lee, Minji Jeon, Jaewoo Kang, Aik Choon Tan*. DSigDB: Drug Signatures Database for Gene Set Analysis. Bioinformatics May 19 2015. (IF: 4.621)

WooKeun Seo†, Jaewoo Kang†, Minji Jeon, Kyubum Lee, Sunwon Lee, Ji Hyun Kim, Kyungmi Oh and SeongBeom Koh. Feasibility of Using a Mobile Application for the Monitoring and Management of Stroke-Associated Risk Factors. Journal of Clinical Neurology Vol. 11 Issue 2 Pages. 142-148 Apr 2015. 

Jihye Kim, Vihas T. Vasu, Rangnath Mishra, Katherine R. Singleton, Minjae Yoo, Sonia M. Leach, Eveline Farias-Hesson, Robert J. Mason, Jaewoo Kang, Preveen Ramamoorthy,Jeffrey A. Kern, Lynn E. Heasley, James H. Finigan and Aik Choon Tan. Bioinformatics-driven discovery of rational combination for overcoming EGFR-mutant lung cancer resistance to EGFR therapy. Bioinformatics Vol. 30 No. 17 Pages. 2393-2398 Sep 2014. doi: 10.1093/bioinformatics/btu323. (IF: 5.233)

Joon Tae Ahn, Gil Hong Park, Jaebum Son, Chae Seung Lim, Jaewoo Kang, Jihun Cha, Kijung Park & Dong Min Kim. Development of Test Toolkit of Hard Review to Evaluate a Random Clinical Decision Support System for the Management of Chronic Adult Diseases. WIRELESS PERSONAL COMMUNICATIONS Vol. 79 Issue 4 May 24 2014. (DOI 10.1007/s11277-014-1835-7, published online) 

Ashis Saha, Aik Choon Tan, Jaewoo Kang*. Automatic Context-Specific Subnetwork Discovery from Large Interaction Networks. PLOS ONE Vol. 9 Issue 1 Jan 1 2014. (IF: 3.73)

Woondong Yeo, Seonho Kim, Jae-Min Lee, Jaewoo Kang*. Aggregative and stochastic model of main path identification: a case study on graphene. Scientometrics Vol. 98 Issue 1 Pages. 633-655 Jan 1 2014. (DOI) 10.1007/s11192-013-1140-3. (IF: 2.133)

Minji Jeon, Sunwon Lee, Kyubum Lee, Aik-Choon Tan and Jaewoo Kang*. BEReX: Biomedical Entity-Relationship eXplorer. Bioinformatics Vol. 30 Issue 1 Pages. 135-136 Jan 2014. (IF: 5.323)

Pankaj Chopra, Jaewoo Kang, Seung-Mo Hong. Comparative meta-analysis between human and  mouse cancer microarray data reveals critical pathways. International Journal of Data Mining and Bioinformatics Vol. 9 Issue 3 Pages. 349-365 Sep 2013. 

Jihye Kim, Minjae Yoo, Jaewoo Kang, Aik Choon Tan. K-Map: connecting kinases with therapeutics for drug repurposing and development. Human Genomics Vol. 7 Issue 20 Sep 23 2013.

Woondong Yeo, Seonho Kim, Byoung-Youl Coh, Jaewoo Kang*. A quantitative approach to recommend promising technologies for SME innovation: a case study on knowledge arbitrage from LCD to solar cell. Scientometrics Vol. 96 Issue 2 Pages. 589-604 Jul 2013. (IF: 2.133)

Jaehoon Choi, Jaewoo Kang, Jinseung Lee, Chihwan Song, Qingsong Jin, Sunwon Lee, Jinsun Uh. Mining Botnets and Their Evolution Patterns. Journal of Computer Science and Technology Vol. 28 No. 4 Pages. 605-615 Jul 2013. 

Junkyu Lee, Seongsoon Kim, Sunwon Lee, Kyubum Lee, Jaewoo Kang*. On the efficacy of per-relation basis performance evaluation for PPI extraction and a high-precision rule-based approach. BMC Medical Informatics and Decision Making Vol. 13 No. 1 Apr 5 2013. 

Sunwon Lee, Jaewoo Kang, Junho Oh. A 2-phased approach for detecting multiple loci associations with traits. International Journal of Data Mining and Bioinformatics Vol. 6 Issue 5 Pages. 535-556 Sep 2012. 

Do Hoon Kim, Taek Lee, Jaewoo Kang, Hyunchoel Jeong, Hoh Peter In. Adaptive pattern mining model for early detection of botnet-propagation scale. Security and Communication Networks Vol. 5 Issue 8 Pages. 917-927 Aug 2012. 

Jaehoon Choi, Donghyeon Kim, Seongsoon Kim, Sunwon Lee, Kyubum Lee and Jaewoo Kang*. BOSS: context-enhanced search for biomedical objects. BMC Medical Informatics and Decision Making Vol. 12 No. 1 Apr 30 2012. (IF: 2.23)

Pankaj Chopra, Hanjun Shin, Jaewoo Kang and Sunwon Lee. SignatureClust: a tool for landmark gene-guided clustering. Soft Computing Vol. 16 No. 3 Pages. 411-418 Mar 2012. 

Hanjun Shin, Sunwon Lee, Himchan Kim, Jaewoo Kang*, Koohyong Lee. Extracting Signals from Noisy Single-Channel EEG Stream for Ubiquitous Healthcare Applications. Journal of Internet Technology Vol. 13 No. 1 Pages 85-94 Jan 2012. 

Pankaj Chopra, Jinseung Lee, Jaewoo Kang and Sunwon Lee. Improving Cancer Classification Accuracy Using Gene Pairs. PLOS ONE Vol. 5 Issue 12 Pages. 01-10 Dec 21 2010. (IF: 4.351)

Yoojin Hong, Jaewoo Kang, Dongwon Lee, and Damian B. van Rossum. Adaptive GDDA-BLAST: Fast and Efficient Algorithm for Protein Sequence Embedding. PLOS ONE Vol. 5 Issue 10 Pages 01-10 Oct 22 2010. (IF: 4.351)

Hanjun Shin, Ki Hoon Kim, Chihwan Song, Injoon Lee, Kyubum Lee, Jaewoo Kang*, and Yoon Kyoo Kang*. Electrodiagnosis support system for localizing neural injury in an upper limb. Journal of the American Medical Informatics Association Vol. 17 Issue 3 Pages. 345-347 May 2010. (IF: 3.974)

Gayathri Tambaram Kailasam, and Jin-Seung Lee, Jae-Won Rhee, and Jaewoo Kang*. Efficient skycube computation using point and domain-based filtering. Information Sciences Vol. 180 Issue 7 Pages. 1090-1103 Apr 2010. (IF: 3.291)

Sungbo Seo, Jaewoo Kang, and Keun Ho Ryu. Multivariable stream data classification using motifs and their temporal relations. Information Sciences Vol. 179 Issue 20 Pages. 3489-3504 Aug 2009. (IF: 3.291)

HyungJun Cho, Jaewoo Kang, and Jae K. Lee. Empirical Bayes analysis of unreplicated microarray data. Computational Statistics Vol. 24 No. 3 Pages. 393-408 Aug 2009. 

Kuan-ming Lin, Jaewoo Kang, Hanjun Shin, and Jusang Lee. A cube framework for incorporating inter-gene information into biological data mining. International Journal of Data Mining and Bioinformatics Vol. 3 No. 1 Pages. Mar 2009. 

HyungJun Cho, Ami Yu, Sukwoo Kim, Jaewoo Kang, and Seung-Mo Hong. Robust Likelihood-Based Survival Modeling with Microarray Data. Journal of Statistical Software Vol. 29 Issue 1 Jan 2009. (IF: 2.32)

Jaewoo Kang, and Jeffrey F. Naughton. Schema Matching Using Interattribute Dependencies. IEEE Transactions on Knowledge and Data Engineering Vol. 20 No. 10 Pages. 1393-1407 Oct  2008. (IF: 2.285)

Sunshin Kim, Jaewoo Kang, Yong Je Chung, Jinyan Li, and Keun Ho Ryu. Clustering orthologous proteins across phylogenetically distant species. Proteins: Structure, Function, and Bioinformatics Vol. 71 Issue 3 Pages. 1113-1122 May 2008. (IF: 3.085)

Pankaj Chopra, Jaewoo Kang, Jiong Yang, HyungJun Cho, Heenam Stanley Kim, and Min-Goo Lee. Microarray data mining using landmark gene-guided clustering. BMC Bioinformatics Vol. 9 Issue 1 Feb 2008. (IF: 3.428)

Dongwon Lee, Jaewoo Kang, Prasenjit Mitra, C. Lee Giles, and Byung-Won On. Are your citations clean? Communications of the ACM Vol. 50 Issue 12 Pages. 33-38 Dec 2007. (IF: 2.346)

Bin Song, Jeong-Hyeon Choi, Guangyu Chen, Jacek Szymanski, Guo-Qiang Zhang, Anthony K. H. Tung, Jaewoo Kang, Sun Kim, and Jiong Yang. ARCS: An Aggregated Related Column Scoring Scheme for Aligned Sequences. Bioinformatics Vol. 22 No. 19 Pages. 2326-2332 Oct 2006. (IF: 4.926)

Sungbo Seo, Jaewoo Kang, Dongwon Lee, and Keun Ho Ryu. Multivariate Stream Data Classification Using Simple Text Classifiers. Proceedings of 17th International Conference on Database and Expert Systems Applications (DEXA), Krakow, Poland Vol. 4080 Pages. 420-429 Sep 2006. (LNCS 4080, Springer 2006, ISBN 3-540-37871-5)

Sungbo Seo, Jaewoo Kang, and Keun Ho Ryu. Multivariate Stream Data Reduction in Sensor Network Applications. Proceedings of the Second International Symposium on Ubiquitous Intelligence and Smart Worlds (UISW), Nagasaki, Japan Vol. 3823 Pages. 198-207 May 2005. (LNCS 3823, Springer 2005, ISBN 3-540-30803-2)

Jaewoo Kang, Jiong Yang, Wanhong Xu, and Pankaj Chopra. Integrating Heterogeneous Microarray Data Sources Using Correlation Signatures. Proceedings of the International Workshop on Data Integration in the Life Sciences (DILS), San Diego, CA Vol. 3615 Pages. 105-120 Aug 2005. (LNCS 3615, Springer 2005, ISBN 3-540-27967-9)

Jaewoo Kang, Dongwon Lee, and Prasenjit Mitra. Identifying Value Mappings for Data Integration: An Unsupervised Approach. Proceedings of the International Conference on Web Information Systems Engineering (WISE), New York, NY Vol. 3806 Pages. 544-551 Nov 2005. (LNCS 3806, Springer 2005, ISBN 3-540-30017-1)

Jeffrey F. Naughton, David J. DeWitt, David Maier, Ashraf Aboulnaga, Jianjun Chen, Leonidas Galanis, Jaewoo Kang, and others. The Niagara Internet Query System. IEEE Data Engineering Bulletin Vol. 24 No. 2 Pages. 27-33 Jun 2001. (Google Scholar Citation Count: 199)

Mary F. Fernandez, Daniela Florescu, Jaewoo Kang, Alon Y. Levy, and Dan Suciu. Overview of Strudel - A Web-Site Management System. Networking and Information Systems Journal Vol. 1 Pages. 115-140 Dec 1998.

Donghee Choi, Mogan Gim, Donghyeon Park, Mujeen Sung, Hyunjae Kim, Jaewoo Kang*, Jihun Choi*. CookingSense: A Culinary Knowledgebase with Multidisciplinary Assertions. LREC-COLING 2024

Hyunjae Kim, Seunghyun Yoon, Trung Bui, Handong Zhao, Quan Tran, Franck Dernoncourt, Jaewoo Kang*. Fine-tuning CLIP Text Encoders with Two-step Paraphrasing. EACL 2024 (Findings)

Gangwoo Kim, Sungdong Kim, Byeongguk Jeon, Joonsuk Park, Jaewoo Kang*. Tree of Clarifications: Answering Ambiguous Questions with Retrieval-Augmented Large Language Models. EMNLP 2023

Mujeen Sung, James Gung, Elman Mansimov, Nikolaos Pappas, Raphael Shu, Salvatore Romeo, Yi Zhang, Vittorio Castelli. Pre-training Intent-Aware Encoders for Zero- and Few-Shot Intent Classification. EMNLP 2023 

Hyunjun Lee†, Junhyun Lee†, Taehwa Choi, Jaewoo Kang*, Sangbum Choi*. Towards Flexible Time-to-Event Modeling: Optimizing Neural Networks via Rank Regression. ECAI 2023

Gangwoo Kim, Hajung Kim, Lei Ji, Seongsu Bae, Chanhwi Kim, Mujeen Sung, Hyunjae Kim, Kun Yan, Eric Chang, Jaewoo Kang*. KU-DMIS-MSRA at RadSum23: Pre-trained Vision-Language Model for Radiology Report Summarization. BioNLP Workshop @ ACL 2023

Hyunjae Kim, Jaehyo Yoo, Seunghyun Yoon, Jaewoo Kang*. Automatic Creation of Named Entity Recognition Datasets by Querying Phrase Representations. ACL 2023

Mujeen Sung, Jungsoo Park, Jaewoo Kang, Danqi Chen, Jinhyuk Lee. Optimizing Test-Time Query Representations for Dense Retrieval. Findings of ACL 2023 

Seongyun Lee†, Hyunjae Kim†, Jaewoo Kang. LIQUID: A Framework for List Question Answering Dataset Generation. AAAI 2023

Wonjin Yoon†, Richard Jackson†, Elliot Ford, Vladimir Poroshin, Jaewoo Kang, Biomedical NER for the Enterprise with Distillated BERN2 and the Kazu Framework. EMNLP 2022 Industry Track

Sungdong Kim, Gangwoo Kim. Saving Dense Retriever from Shortcut Dependency in Conversational Search. EMNLP 2022

Gangwoo Kim†, Sungdong Kim†, Kang Min Yoo, Jaewoo Kang*. Generating Information-Seeking Conversations from Unlabeled Documents. EMNLP 2022

Hyunjae Kim, Jaehyo Yoo, Seunghyun Yoon, Jinhyuk Lee, Jaewoo Kang*. Simple Questions Generate Named Entity Recognition Datasets. EMNLP 2022

Mogan Gim†, Donghee Choi†, Kana Maruyama, Jihun Choi, Hajung Kim, Donghyeon Park* and Jaewoo Kang*. RecipeMind: Guiding Ingredient Choices from Food Pairing to Recipe Completion using Cascaded Set Transformer. CIKM 2022

Seoyoon Kim, Seongjun Yun, Jaewoo Kang. DyGRAIN: An Incremental Learning Framework for Dynamic Graphs. IJCAI 2022

Jungsoo Park†, Gyuwan Kim†, Jaewoo Kang. Consistency Training with Virtual Adversarial Discrete Perturbation. NAACL 2022

Jungsoo Park†, Sewon Min†, Jaewoo Kang, Luke Zettlemoyer, Hannaneh Hajishirzi. FAVIQ: FAct Verification from Information-seeking Questions. ACL 2022

Bumsoo Kim, Jonghwan Mun, Kyoung-Woon On, Minchul Shin, Junhyun Lee, Eun-Sol Kim. MSTR: Multi-Scale Transformer for End-to-End Human-Object Interaction Detection. CVPR 2022 

Seongjun Yun, Seoyoon Kim, Junhyun Lee, Jaewoo Kang*, Hyunwoo J. Kim*. Neo-GNNs: Neighborhood Overlap-aware Graph Neural Networks for Link Prediction. NeurIPS 2021

Jinhyuk Lee, Alexander Wettig, Danqi Chen. Phrase Retrieval Learns Passage Retrieval, Too. EMNLP 2021

Mujeen Sung, Jinhyuk Lee, Sean Yi, Minji Jeon, Sungdong Kim, Jaewoo Kang*. Can Language Models be Biomedical Knowledge Bases?. EMNLP 2021

Christohper Sciavolino, Zexuan Zhong, Jinhyuk Lee, Danqi Chen. Simple Entity-Centric Questions Challenge Dense Retrievers. EMNLP 2021

Wonjin Yoon, Jaehyo Yoo, Sumin Seo, Mujeen Sung, Minbyul Jeong, Gangwoo Kim, Jaewoo Kang*. KU-DMIS at BioASQ 9: Data-centric and model-centric approaches for biomedical question answering. The 9th BioASQ Workshop at CLEF 2021. (Invited to "Best of 2021 Labs paper" track of CLEF 2022) 

Jinhyuk Lee, Mujeen Sung, Jaewoo Kang, Danqi Chen. Learning Dense Representations of Phrases at Scale. ACL-IJCNLP 2021

Gangwoo Kim, Hyunjae Kim, Jungsoo Park, Jaewoo Kang*. Learn to Resolve Conversational Dependency: A Consistency Training Framework for Conversational Question Answering. ACL-IJCNLP 2021

Bumsoo Kim, Junhyun Lee, Jaewoo Kang, Eun-Sol Kim*, Hyunwoo J. Kim*.  HOTR: End-to-End Human-Object Interaction Detection with Transformers. CVPR  2021, (Oral presentation, Acceptance ratio: 2.5%)

Buru Chang, Inggeol Lee, Hyunjae Kim, Jaewoo Kang*. 'Killing Me' Is Not a Spolier: Spoiler Detection Model using Graph Neural Networks with Dependency Relation-Aware Attention Mechanism. EACL 2021

Jungsoo Park, Mujeen Sung, Jinhyuk Lee*, Jaewoo Kang*. Adversarial Subword Regularization for Robust Neural Machine Translation. EMNLP / Findings, November 16-20 2020,(Acceptance ratio: 37%)

Miyoung Ko, Jinhyuk Lee*, Hyunjae Kim, Gangwoo Kim, and Jaewoo Kang*. Look at the First Sentence: Position Bias in Question Answering. The 2020 Conference on Empirical Methods in Natural Language Processing (EMNLP), Online, November 16-20 2020, (Acceptance ratio: 22.4%)

Buru Chang, Gwanghoon Jang, Seoyoon Kim, and Jaewoo Kang*. Learning Graph-Based Geographical Latent Representation for Point-of-Interest Recommendation. The 29th ACM International Conference on Information and Knowledge Management (CIKM20), Online, October 19-23 2020 (Acceptance ratio: 21%) 

Minbyul Jeong †, Mujeen Sung †, Gangwoo Kim, Donghyeon Kim, Wonjin Yoon, Jaehyo Yoo, Jaewoo Kang*, Transferability of Natural Language Inference to Biomedical Question Answering. The 8th BioASQ Workshop at CLEF 2020. Online (Thessaloniki, Greece). Sep 22 - 25, 2019.

Byungjoo Kim†, Bryce Chudomelka†, Jinyoung Park, Jaewoo Kang*, Youngjoon Hong, Hyunwoo J Kim*. Robust Neural Networks inspired by Strong Stability Preserving Rung-Kutta methods. European Conference on Computer Vision (ECCV) 2020, Online, August 23-28 2020, (Acceptance ratio: 27%) 

Bumsoo Kim†, Taeho Choi†, Jaewoo Kang*, Hyunwoo J Kim*. UnionDet: Union-level Detector Towards Real-Time Human-Object Interaction Detection. European Conference on Computer Vision (ECCV) 2020, Online, August 23-28 2020, (Acceptance ratio: 27%) 

Jinho Lee†, Raehyun Kim†, Seokwon Lee, Jaewoo Kang*. MAPS: Multi-Agent reinforcement learning-based Portfolio management System. International Joint Conference on Artificial Intelligence (IJCAI 2020), July 11-17, 2020.

Mujeen Sung, Hwisang Jeon, Jinhyuk Lee*, Jaewoo Kang*. Biomedical Entity Representations with Synonym Marginalization. 2020 Annual Conference of the Association for Computational Linguistics (ACL 2020), July 5-10, 2020.

Jinhyuk Lee, Minjoon Seo, Hannaneh Hajishirzi, Jaewoo Kang. Contextualized Sparse Representations for Real-Time Open-Domain Question Answering. 2020 Annual Conference of the Association for Computational Linguistics (ACL 2020), July 5-10, 2020.

Buru Chang, Yookyung Koh, Donghyeon Park, Jaewoo Kang*. Content-Aware Successive Point-of-Interest Recommendation. SIAM International Conference on Data Mining (SDM 2020), Cincinnati, Ohio, U.S., May 7-9, 2020.

Seongjun Yun, Minbyul Jeong, Raehyun Kim, Jaewoo Kang*, Hyunwoo J. Kim*. Graph Transformer Networks. In Advances in Neural Information Processing Systems (NeurIPS, 2019). Vancouver, Canada. Dec 8-14, 2019. 

Wonjin Yoon, Jinhyuk Lee, Donghyeon Kim, Minbyul Jeong, Jaewoo Kang*, Pre-trained language model for biomedical question answering. The 7th BioASQ Workshop at ECML PKDD 2019. Wurzburg, Germany. Sep 20, 2019.

Donghyeon Park, Mogan Gim, Yonggyu Park, Jungwoon Shin, Jaewoo Kang*. KitcheNette: Prediction and Ranking Food Ingredient Pairings based on Siamese Neural Network. International Joint Conferences on Artificial Intelligence Organization (IJCAI 2019). Macao, China. Aug 10-16, 2019. 

Minjoon Seo†, Jinhyuk Lee†, Tom Kwiatkowski, Ankur Parikh, Ali Farhadi, Hannaneh Hajishirzi. Real-Time Open-Domain Question Answering on Wikipedia with Dense-Sparse Phrase Index. Association for Computational Linguistics (ACL 2019). Florence, Italy. Jul 28- Aug 2, 2019. 

Seoungjun Yun†, Raehyun Kim†, Miyoung Ko, Jaewoo Kang*. SAIN: Self-Attentive Integration Network for Recommendation. International ACM SIGIR Conference on Research and Development in Information Retrieval (SIGIR 2019). Paris, France. Jul 21-25, 2019. (short) 

Junhyun Lee†, Inyeop Lee†, Jaewoo Kang*. Self-Attention Graph Pooling. International Conference on Machine Learning (ICML 2019). Long Beach, USA. Jun 9-15, 2019.

Raehyun Kim†, Hyunjae Kim†, Janghyuk Lee, and Jaewoo Kang*. Predicting Multiple Demographic Attributes with Task Specific Embedding and Attention Network. SIAM International Conference on Data Mining (SDM19). Calgary, Alberta, Canada, May 2-4, 2019.

Jinhyuk Lee, Seongjun Yun, Hyunjae Kim, Miyoung Ko, and Jaewoo Kang*. Ranking Paragraphs for Improving Answer Recall in Open-Domain Question Answering. Conference on Empirical Methods in Natural Language Processing (EMNLP 2018). Brussels, Belgium. Oct 31 - Nov 4, 2018. (short)

Donghyeon Kim†, Jinhyuk Lee†, Donghee Choi, Jaehoon Choi and Jaewoo Kang*. Learning User Preferences and Understanding Calendar Contexts for Event Scheduling. International Conference on Information and Knowledge Management (CIKM 2018). Turin, Italy. Oct 22-26, 2018.

Buru Chang, Yonggyu Park, Donghyeon Park, Seongsoon Kim, and Jaewoo Kang*. Content-Aware Point-of-Interest Embedding Model for Successive POI Recommendation. The 27th International Joint Conference on Artificial Intelligence (IJCAI 18). Stockholm, Sweden. Jul 13-19, 2018.

Buru Chang, Hyunjae Kim, Raehyun Kim, Daehan Kim, and Jaewoo Kang*. A Deep Neural Spoiler Detection Model using a Genre-Aware Attention Mechanism. The 22nd Pacific-Asia Conference on Knowledge Discovery and Data Mining (PAKDD 18). Melbourne, Australia. Jun 3-6 2018.

Jinhyuk Lee, Hyunjae Kim, Miyoung Ko, Donghee Choi, Jaehoon Choi, Jaewoo Kang*. Name Nationality Classification with Recurrent Neural Networks.  The Twenty-sixth International Joint Conference on Artificial Intelligence (IJCAI-17) Melbourne, Australia. Aug 2017.

Seongsoon Kim†, Seongwoon Lee†, Donghyeon Park, and Jaewoo Kang*. Constructing and Evaluating a Novel Crowdsourcing-based Paraphrased Opinion Spam Dataset. The 26th International World Wide Web Conference (WWW 2017).

Jukyong Lee, Yonghwa Choi, Suhkyung Kim, Seongsoon Kim, Jaewoo Kang*. SEMO: Searching Majority Opinions on Movies using SNS and QA Threads. The 25th International World Wide Web Conference (WWW). Montreal, Canada, Apr 11-15, 2016. (demo)

Seongsoon Kim, Hyeokyoon Chang, Seongwoon Lee, Minhwan Yu, Jaewoo Kang*. Deep Semantic Frame-based Deceptive Opinion Spam Analysis. In Proceedings of ACM International Conference on Information and Knowledge Management (CIKM). Melbourne, Australia. Oct 19-23 2015.

Jaehoon Choi, Donghyeon Kim, Donghee Choi, Seongsoon Kim, Sangrak Lim, Youngjae Choi and Jaewoo Kang*. Smith Search: Opinion-Based Restaurant Search Engine. Proceedings of the 24st International Conference on World Wide Web (WWW). Florence, Italy. May 17-23 2015. (demo)

Injoon Lee, Jaehoon Choi and Jaewoo Kang*. Multi-faceted Signature-Based Polymorphic Worm Detection System. The 5th International Conference on Emerging Databases (EDB). Aug 20 2013.

Jaehoon Choi, Donghyeon Kim, Seongsoon Kim, Junkyu Lee, Sunwon Lee and Jaewoo Kang*. Consento: A New Framework for Opinion Based Entity Search and Summarization. 21st ACM International Conference on Information and Knowledge Management (CIKM). Hawaii, USA. Oct 29 2012. (short)

Junkyu Lee, Seongsoon Kim, Sunwon Lee, Kyubum Lee, Jaewoo Kang*. High Precision Rule Based PPI Extraction and Per-Pair Basis Performance. ACM Sixth International Workshop on Data and Text Mining in Biomedical Informatics (DTMBIO). Maui, Hawaii USA. Oct 29 2012.

Ashis Saha, Jaewoo Kang*. Gene Interaction-Level Cancer Classification using Gene Expression Profiles. Translational Bioinformatics Conference (TBC). Jeju, South Korea. Oct 13-16 2012.

Kyubum Lee, Sunwon Lee, Minji Jeon, Jaehoon Choi, and Jaewoo Kang*. Drug-Drug Interaction Analysis Using Heterogeneous Biological Information Network. IEEE International Conference on Bioinformatics and Biomedicine (IEEE BIBM 2012). Philadelphia, US. Oct 4-7 2012.

Jaehoon Choi, Jaewoo Kang, Jinseung Lee, Chihwan Song, Qingsong Jin, Sunwon Lee and Jinsun Uh. Mining the Global Network of Compromised Machines. Proceedings of the 4th International Conference on Emerging Databases-Technologies,Applications, and Theory (EDB). Aug 23 2012.

Jaehoon Choi, Donghyeon Kim, Seongsoon Kim, Junkyu Lee, Sangrak Im, Sunwon Lee and Jaewoo Kang*. Consento: A Consensus Search Engine for Answering Subjective Queries. Proceedings of the 21st International Conference on World Wide Web (WWW). Lyon, France. Apr 16-20 2012. (poster)

Jaehoon Choi, Donghyeon Kim, Seongsoon Kim, Sunwon Lee, Kyubum Lee and Jaewoo Kang*. BOSS: A Biomedical Object Search System. ACM Fifth International Workshop on Data and Text Mining in Biomedical Informatics (DTMBIO). Glasgow, UK. Oct 24 2011.

Sunwon Lee, Jaewoo Kang and Junho Oh. A Scalable Method for Detecting Multiple Loci Associated with Traits using TF-IDF Weighting and Association Rule Mining. IEEE International conference on Bioinformatics and Biomedicine Workshops (BIBMW). Hong Kong, China. Dec 18-21 2010.

Hanjun Shin, Himchan Kim,Sangjun Lee, and Jaewoo Kang*. Online Removal of Ocular Artifacts from Single Channel EEG for Ubiquitous Healthcare Applications. The 4th International Conference on Ubiquitous Information Technologies & Applications (ICUT). Dec 20-22 2009.

Quinsong Jin, Jaewoo Kang, and Injoon Lee. Metadata-driven Subspace Collaborative Filtering. The 1st International Conference on Internet (ICONI). Dec 09 2009.

Pankaj Chopra, Jaewoo Kang, and Jinseung Lee. Using Gene Pair Combinations to Improve the Accuracy of the PAM Classifier. Proceedings of the IEEE International conference on Bioinformatics and Biomedicine(BIBM). Washington D.C., USA. Nov 2009.

Pankaj Chopra, Jaewoo Kang, and Seung-Mo Hong. Meta-analysis of cancer microarray data reveals signaling pathway hotspots. 2009 International Workshop on Data Mining for Biomarker Discovery, Washington D.C., USA. Nov 1-4 2009.

Pankaj Chopra, Han Jun Shin, and Jaewoo Kang*. Global gene map for cancer reveals pathway hotspots. Proceedings of the IEEE International conference on Bioinformatics and Biomedicine(BIBM). Philadelphia, USA. Nov 3-5 2008.

Yoojin Hong, Tao Yang, Jaewoo Kang, and Dongwon Lee. Record Linkage as DNA Sequence Alignment Problem. Proceedings of the 6th International Workshop on Quality in Databases and Management of Uncertain Data(QDB). Auckland, New Zeala. Aug 25 2008.

Qiankun Zhao, Prasenjit Mitra, Dongwon Lee, and Jaewoo Kang. HICCUP: Hierarchical Clustering Based Value Imputation using Heterogeneous Gene Expression Microarray Datasets. Proceedings of the 7th IEEE International Conference on Bioinformatics and Bioengineering (BIBE). Harvard Medical School, Boston, Pages 71-78. Oct 14-17 2007.

Tae Sik Han, Seung-Kyu Ko, and Jaewoo Kang*. Efficient Subsequence Matching Using the Longest Common Subsequence with a Dual Match Index. 5th International Conference on Machine Learning and Data Mining in Pattern Recognition (MLDM). Leipzig, Germany, Pages 585-600. Jul 18-20 2007.

Amit C. Awekar, and Jaewoo Kang*. Selective Approach To Handling Topic Oriented Tasks On The World Wide Web. Proceedings of the IEEE Symposium on Computational Intelligence and Data Mining (CIDM). Honolulu, Hawaii, USA, Pages 343-348. Apr 1-5 2007.

Kuan-Ming Lin, and Jaewoo Kang*. Exploiting inter-gene information for microarray data integration. Proceedings of the 2007 ACM Symposium on Applied Computing (SAC). Seoul, Korea, Pages 123-127. Mar 11-15 2007.

Byung-Won On, Ergin Elmacioglu, Dongwon Lee, Jaewoo Kang, and Jian Pei. Improving Grouped-Entity Resolution Using Quasi-Cliques. Proceedings of the 6th IEEE International Conference on Data Mining (ICDM). Hong Kong, China, Pages 1008-1015. Dec 18-22 2006.

Byung-Won On, Ergin Elmacioglu, Dongwon Lee, Jaewoo Kang, and Jian Pei. An effective approach to entity resolution problem using quasi-clique and its application to digital libraries. ACM/IEEE Joint Conference on Digital Libraries (JCDL). Chapel Hill, NC, USA, Pages 51-52. Jun 11-15 2006.

Amit C. Awekar, Pabitra Mitra, and Jaewoo Kang*. Selective hypertext induced topic search. Proceedings of the 15th international conference on World Wide Web (WWW). Edinburgh, Scotland, UK, Pages 1023-1024. May 23-26 2006. (poster)

Jaewoo Kang, Tae Sik Han, Dongwon Lee, and Prasenjit Mitra. Establishing value mappings using statistical models and user feedback. Proceedings of the 2005 ACM International Conference on Information and Knowledge Management (CIKM). Bremen, Germany, Pages 68-75. Nov 5 2005.

Dongwon Lee, Byung-Won On, Jaewoo Kang, and Sanghyun Park. Effective and scalable solutions for mixed and split citation problems in digital libraries. International Workshop on Information Quality in Information Systems (IQIS). Baltimore, Maryland, USA (SIGMOD 2005 Workshop), Pages 69-76. Jun 17 2005.

Byung-Won On, Dongwon Lee, Jaewoo Kang, and Prasenjit Mitra. Comparative study of name disambiguation problem using a scalable blocking-based framework. ACM/IEEE Joint Conference on Digital Libraries (JCDL). Denver, CA, USA, Pages 344-353. Jun 7-11 2005.

Ramrajprabu Balasubramanian, Injong Rhee, and Jaewoo Kang*. A Scalable Architecture for SIP Infrastructure using Content Addressable Networks. Proceedings of the IEEE International Conference on Communications (ICC). Seoul, Korea. May 2005.

Jaewoo Kang, and Jeffrey F. Naughton. On Schema Matching with Opaque Column Names and Data Values. Proceedings of the 2003 ACM SIGMOD International Conference on Management of Data (SIGMOD). San Diego, California, USA, Pages 205-216. Jun 9-12 2003.

Jaewoo Kang, Jeffrey F. Naughton, and Stratis Viglas. Evaluating Window Joins over Unbounded Streams. Proceedings of the 19th International Conference on Data Engineering (ICDE). Bangalore, India, Pages 341-352. Mar 5-8 2003.

Mary F. Fernandez, Daniela Florescu, Jaewoo Kang, Alon Y. Levy, and Dan Suciu. Catching the Boat with Strudel: Experiences with a Web-Site Management System. Proceedings ACM SIGMOD International Conference on Management of Data (SIGMOD). Seattle, Washington, USA, Pages 414-425. Jun 2-4 1998.

Mary F. Fernandez, Daniela Florescu, Jaewoo Kang, Alon Y. Levy, and Dan Suciu. STRUDEL: A Web-site Management System. Proceedings of ACM SIGMOD International Conference on Management of Data (SIGMOD). Tucson, Arizona, Pages 549-552. May 13-15 1997